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Genoset

From SNPedia
(Redirected from Genosets)

A genoset refers to a defined set of genotypes; we have coined the term to represent the combination of alleles at 2 or more loci, especially when they are not contiguous along a chromosome. Typically, these are then related to a medical (or ancestral) consequence that arises only when a particular combination of SNPs is inherited.

Promethease understands this criteria syntax.

More information about genosets can be found in the related SNPedia blog post. Note that genosets themselves are boolean, not quantitative; each genoset is either true (present) or false (absent) in an individual, based on the genoset's criteria, in the same way that a genotype (or allele) is either present or absent. Note that if a DNA microarray platform lacks a given SNP, genosets that require it (that SNP) will not return a result during a Promethease evaluation.

Most Significant

 ReputeMagnitudeSummaryModification date
"Modification date" is a predefined property that corresponds to the date of the last modification of a subject and is provided by Semantic MediaWiki.
Gs14910Testing for orientation issues3 June 2017 01:13:36
Gs318Bad10Unsupported platform9 April 2018 06:33:46
Gs3037WeGene quality control issues.8 June 2016 05:40:37
Gs3007Data Quality issue. Your data provider is reporting heterozygosity on the Y chromosome.23 October 2016 09:50:25
Gs306Bad6.5Poor metabolizer of fluoropyrimidines (e.g. 5-fluorouracil, capecitabine or tegafur).25 May 2017 00:56:35
Gs228Bad6Sickle cell affected3 June 2017 01:37:39
Gs2676APOE1/APOE15 November 2016 18:42:06
Gs216Bad62 copies of the APOE-ε4 allele5 December 2017 19:38:24
Gs314Bad6MUTYH-associated polyposis (and colon cancer risk)24 December 2017 19:56:29
Gs312Bad5.5Intermediate metabolizer of fluoropyrimidines (such as 5-fluorouracil and capecitabine).25 May 2017 01:02:36
... further results


Most Recently Active

 ReputeMagnitudeSummaryModification date
"Modification date" is a predefined property that corresponds to the date of the last modification of a subject and is provided by Semantic MediaWiki.
Gs155Bad2.5CYP3A5 non-expressor5 June 2018 15:03:28
Gs2702.6APOE E2/E4 or possibly E1/E37 May 2018 12:43:43
Gs141Bad3.52x risk of Alzheimer's disease7 May 2018 12:41:13
Gs311Bad2.7Slow metabolizer of DCA (a cancer drug, and a drug used in metabolic problems in children, substance found in chlorinated swimming pool water),slow metabolizer of protein1 May 2018 18:51:58
Gs3231Ancestry v2 with indel calls1 May 2018 05:30:19
Gs2305023andMe v513 April 2018 11:06:55
Gs2304023andMe v413 April 2018 11:06:42
Gs2303023andMe v313 April 2018 11:06:26
Gs2302023andMe v213 April 2018 11:06:11
Gs2301023andMe v113 April 2018 11:05:57
... further results


You can create a new genoset by clicking that link and filling in the form. But you'll still need to populate the criteria syntax.